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1

Peptide docking using dynamic programming

Gulukota, Kamalakar, Vajda, Sandor, Delisi, Charles

Journal:

Journal of Computational Chemistry

Year:

1996

Language:

english

File:

PDF, 997 KB

english, 1996

2

Skipping a step with neural nets

Gulukota, Kamalakar

Journal:

Nature Biotechnology

Year:

1998

File:

PDF, 295 KB

1998

3

HLA allele selection for designing peptide vaccines

Kamalakar Gulukota, Charles DeLisi

Journal:

Genetic Analysis: Biomolecular Engineering

Year:

1996

Language:

english

File:

PDF, 523 KB

english, 1996

4

Two complementary methods for predicting peptides binding major histocompatibility complex molecules

Kamalakar Gulukota, John Sidney, Alessandro Sette, Charles DeLisi

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 302 KB

english, 1997

5

Computational determination of the structure of rat fc bound to the neonatal fc receptor

Zhiping Weng, Kamalakar Gulukota, Daniel E. Vaughn, Pamela J. Bjorkman, Charles DeLisi

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 729 KB

english, 1998

6

Characterization of mGluR5R, a novel, metabotropic glutamate receptor 5-related gene

Brian Bates, Yuhong Xie, Noel Taylor, Jeremy Johnson, Leeying Wu, Seung Kwak, Maria Blatcher, Kamalakar Gulukota, Janet E Paulsen

Journal:

Molecular Brain Research

Year:

2002

Language:

english

File:

PDF, 917 KB

english, 2002

7

Direct observation of genomic heterogeneity through local haplotyping analysis

Gulukota, Kamalakar, Helseth Jr, Donald L, Khandekar, Janardan D

Journal:

Year:

2014

Language:

english

File:

PDF, 740 KB

english, 2014

8

Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data

Zhu, Y., Xu, Y., Helseth, D. L., Gulukota, K., Yang, S., Pesce, L. L., Mitra, R., Muller, P., Sengupta, S., Guo, W., Silverstein, J. C., Foster, I., Parsad, N., White, K. P., Ji, Y.

Journal:

JNCI Journal of the National Cancer Institute

Year:

2015

Language:

english

File:

PDF, 2.54 MB

english, 2015

9

Predicting GPCR-G-protein coupling using hidden Markov models

Sreekumar, K. R., Huang, Y., Pausch, M. H., Gulukota, K.

Journal:

Year:

2004

Language:

english

File:

PDF, 123 KB

english, 2004

10

MAD Bayes for Tumor Heterogeneity—Feature Allocation With Exponential Family Sampling

Xu, Yanxun, Müller, Peter, Yuan, Yuan, Gulukota, Kamalakar, Ji, Yuan

Journal:

Journal of the American Statistical Association

Year:

2015

Language:

english

File:

PDF, 803 KB

english, 2015

11

Estimating Latent Cell Subpopulations with Bayesian Feature Allocation Models

Y. Ji, S. Sengupta, J. Lee, P. Müller, K. Gulukota

Year:

2015

Language:

english

File:

PDF, 944 KB

english, 2015

12

Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples

Sengupta, Subhajit, Gulukota, Kamalakar, Zhu, Yitan, Ober, Carole, Naughton, Katherine, Wentworth-Sheilds, William, Ji, Yuan

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 5.30 MB

english, 2015

13

Statistical Mechanics of Kinetic Proofreading in Protein Folding In vivo

Kamalakar Gulukota and Peter G. Wolynes

Journal:

Proceedings of the National Academy of Sciences

Year:

1994

Language:

english

File:

PDF, 1.03 MB

english, 1994

14

SPIE Proceedings [SPIE 1988 Robotics Conferences - Boston, MA (Monday 7 November 1988)] Sensor Fusion: Spatial Reasoning and Scene Interpretation - Reasoning With Uncertainty About Textures

Dunn, Stanley M., Gulukota, Karunakar, Schenker, Paul S.

Year:

1989

Language:

english

File:

PDF, 555 KB

english, 1989

15

SPIE Proceedings [SPIE Robotics and IECON '87 Conferences - Cambridge, CA (Monday 2 November 1987)] Intelligent Robots and Computer Vision VI - Discriminating Textured Surfaces In Natural Imagery

Dunn, Stanley, Gulukota, Karunakar, Casasent, David P., Hall, Ernest L.

Year:

1988

Language:

english

File:

PDF, 407 KB

english, 1988

16

Statistical mechanics of kinetic proofreading in protein folding in vivo.

Gulukota, K., Wolynes, P. G.

Journal:

Proceedings of the National Academy of Sciences

Year:

1994

Language:

english

File:

PDF, 980 KB

english, 1994

17

Bayesian inference for intratumour heterogeneity in mutations and copy number variation

Lee, Juhee, Müller, Peter, Sengupta, Subhajit, Gulukota, Kamalakar, Ji, Yuan

Journal:

Journal of the Royal Statistical Society: Series C (Applied Statistics)

Year:

2016

Language:

english

File:

PDF, 591 KB

english, 2016

18

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (4 – 8 January 2015)] Biocomputing 2015 - BAYCLONE: BAYESIAN NONPARAMETRIC INFERENCE OF TUMOR SUBCLONES USING NGS DATA

SENGUPTA, SUBHAJIT, WANG, JIN, LEE, JUHEE, MÜLLER, PETER, GULUKOTA, KAMALAKAR, BANERJEE, ARUNAVA, JI, YUAN

Language:

english

File:

PDF, 1.44 MB

english

19

A Bayesian feature allocation model for tumor heterogeneity

Lee, Juhee, Müller, Peter, Gulukota, Kamalakar, Ji, Yuan

Journal:

The Annals of Applied Statistics

Year:

2015

Language:

english

File:

PDF, 1.02 MB

english, 2015

20

Germline Mutations in ATM and BRCA1/2 Distinguish Risk for Lethal and Indolent Prostate Cancer and are Associated with Early Age at Death

Na, Rong, Zheng, S. Lilly, Han, Misop, Yu, Hongjie, Jiang, Deke, Shah, Sameep, Ewing, Charles M., Zhang, Liti, Novakovic, Kristian, Petkewicz, Jacqueline, Gulukota, Kamalakar, Helseth Jr, Donald L., Q

Journal:

European Urology

Year:

2017

Language:

english

File:

PDF, 1018 KB

english, 2017

21

Germline mutations in ATM and BRCA1/2 distinguish risk for lethal and indolent prostate cancer and are associated with early age at death

Na, R., Zheng, S.L., Han, M., Yu, H., Jiang, D., Shah, S., Ewing, C., Zhang, L., Novakovic, K., Petkewicz, J., Gulukota, K., Helseth, D., Quinn, M., Humphries, E., Wiley, K., Isaacs, S., Wu, Y., Liu,

Journal:

European Urology Supplements

Year:

2017

Language:

english

File:

PDF, 218 KB

english, 2017

22

MP57-01 GERMLINE MUTATIONS IN DNA REPAIR GENES ARE SIGNIFICANTLY ENRICHED IN LETHAL PROSTATE CANCER AND ARE ASSOCIATED WITH DISEASE SURVIVAL

Na, Rong, S. Lilly, S. Lilly, Han, Misop, Yu, Hongjie, Jiang, Deke, Shah, Sameep, Ewing, Charles, Zhang, Liti, Novakovic, Kristian, Petkewicz, Jacqueline, Gulukota, Kamalakar, Helseth Jr, Donald, Quin

Journal:

The Journal of Urology

Year:

2017

Language:

english

File:

PDF, 327 KB

english, 2017

23

An oncolytic adenovirus targeting TGFβ inhibits pro-tumorigenic signals and produces immune activation: A novel approach to enhance anti-PD-1 and anti-CTLA-4 therapy

Seth, Prem, Yang, Yuefeng, Xu, Weidong, Peng, Di, Wang, Hao, Zhang, Xiaoyan, Wang, Hua, Xiao, Fengjun, Zhu, Yitan, Ji, Yuan, Gulukota, Kamalakar, Helseth Jr, Donald L, Mangold, Kathy A, Sullivan, Mega

Journal:

Human Gene Therapy

Year:

2019

Language:

english

File:

PDF, 4.35 MB

english, 2019

24

LyP-1-modified oncolytic adenoviruses targeting transforming growth factor Î² inhibit tumor growth and metastases and augment immune checkpoint inhibitor therapy in breast cancer mouse models

Seth, Prem, Xu, Weidong, Yang, Yuefeng, Hu, Zebin, Head, Maria, Mangold, Kathy A, Sullivan, Megan, Wang, Chi-Hsiung, Saha, Poornima, Gulukota, Kamalakar, Helseth Jr, Donald L, Guise, Theresa, Prabhaka

Journal:

Human Gene Therapy

Year:

2020

File:

PDF, 2.43 MB

2020